pyrox.dev
1{
2 lib,
3 buildPythonPackage,
4 fetchFromGitHub,
5
6 # build-system
7 setuptools,
8 setuptools-scm,
9
10 # dependencies
11 dask,
12 numpy,
13 scipy,
14 pandas,
15 pims,
16
17 # tests
18 pyarrow,
19 pytestCheckHook,
20 scikit-image,
21}:
22
23buildPythonPackage rec {
24 pname = "dask-image";
25 version = "2024.5.3";
26 pyproject = true;
27
28 src = fetchFromGitHub {
29 owner = "dask";
30 repo = "dask-image";
31 tag = "v${version}";
32 hash = "sha256-kXCAqJ2Zgo/2Khvo2YcK+n4oGM219GyQ2Hsq9re1Lac=";
33 };
34
35 postPatch = ''
36 substituteInPlace dask_image/ndinterp/__init__.py \
37 --replace-fail "out_bounds.ptp(axis=1)" "np.ptp(out_bounds, axis=1)"
38
39 substituteInPlace tests/test_dask_image/test_imread/test_core.py \
40 --replace-fail "fh.save(" "fh.write("
41 '';
42
43 build-system = [
44 setuptools
45 setuptools-scm
46 ];
47
48 dependencies = [
49 dask
50 numpy
51 scipy
52 pandas
53 pims
54 ];
55
56 nativeCheckInputs = [
57 pyarrow
58 pytestCheckHook
59 scikit-image
60 ];
61
62 pythonImportsCheck = [ "dask_image" ];
63
64 disabledTests = [
65 # The following tests are from 'tests/test_dask_image/test_ndmeasure/test_find_objects.py' and
66 # fail because of errors on numpy slices
67 # AttributeError: 'str' object has no attribute 'start'
68 "test_find_objects"
69 "test_3d_find_objects"
70
71 # AssertionError (comparing slices)
72 "test_find_objects_with_empty_chunks"
73 ];
74
75 meta = {
76 description = "Distributed image processing";
77 homepage = "https://github.com/dask/dask-image";
78 changelog = "https://github.com/dask/dask-image/releases/tag/v${version}";
79 license = lib.licenses.bsdOriginal;
80 maintainers = with lib.maintainers; [ GaetanLepage ];
81 };
82}