pyrox.dev
1{
2 lib,
3 buildPythonPackage,
4 pythonOlder,
5 fetchFromGitHub,
6 hatchling,
7 dask,
8 numpy,
9 python-dateutil,
10 spatial-image,
11 xarray,
12 xarray-dataclass,
13 zarr,
14 dask-image,
15 fsspec,
16 jsonschema,
17 nbmake,
18 pooch,
19 pytestCheckHook,
20 pytest-mypy,
21 urllib3,
22}:
23
24buildPythonPackage rec {
25 pname = "multiscale-spatial-image";
26 version = "2.0.3";
27 pyproject = true;
28
29 disabled = pythonOlder "3.8";
30
31 src = fetchFromGitHub {
32 owner = "spatial-image";
33 repo = "multiscale-spatial-image";
34 tag = "v${version}";
35 hash = "sha256-wKSzhlNXIXOFEK8+xfKF6zTFr0+mdFhhvjWiHAKphk0=";
36 };
37
38 build-system = [ hatchling ];
39
40 dependencies = [
41 dask
42 numpy
43 python-dateutil
44 spatial-image
45 xarray
46 xarray-dataclass
47 zarr
48 ];
49
50 optional-dependencies = {
51 dask-image = [ dask-image ];
52 #itk = [
53 # itk-filtering # not in nixpkgs yet
54 #];
55 test = [
56 dask-image
57 fsspec
58 #ipfsspec # not in nixpkgs
59 #itk-filtering # not in nixpkgs
60 jsonschema
61 nbmake
62 pooch
63 pytest-mypy
64 urllib3
65 ];
66 };
67
68 nativeCheckInputs = [ pytestCheckHook ] ++ optional-dependencies.test;
69
70 doCheck = false; # all test files try to download data
71
72 pythonImportsCheck = [ "multiscale_spatial_image" ];
73
74 meta = {
75 description = "Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF";
76 homepage = "https://github.com/spatial-image/multiscale-spatial-image";
77 changelog = "https://github.com/spatial-image/multiscale-spatial-image/releases/tag/v${version}";
78 license = lib.licenses.asl20;
79 maintainers = with lib.maintainers; [ bcdarwin ];
80 };
81}