pyrox.dev
1{
2 lib,
3 buildPythonPackage,
4 fetchFromGitHub,
5 fetchpatch2,
6
7 # build-system
8 cython,
9 meson-python,
10 ninja,
11 setuptools,
12
13 # dependencies
14 numpy,
15 scipy,
16 nibabel,
17 sympy,
18 transforms3d,
19
20 # optional-dependencies
21 matplotlib,
22
23 # tests
24 pytestCheckHook,
25}:
26
27buildPythonPackage rec {
28 version = "0.6.1";
29 pname = "nipy";
30 pyproject = true;
31
32 src = fetchFromGitHub {
33 owner = "nipy";
34 repo = "nipy";
35 tag = version;
36 hash = "sha256-KGMGu0/0n1CzN++ri3Ig1AJjeZfkl4KzNgm6jdwXB7o=";
37 };
38
39 patches = [
40 # https://github.com/nipy/nipy/pull/589
41 (fetchpatch2 {
42 url = "https://github.com/nipy/nipy/pull/589/commits/76f2aae95dede9b8ac025dc32ce94791904f25e4.patch?full_index=1";
43 hash = "sha256-Rnwfx6JKl+nE9wvBGKXFtizjuB4Bl1QDF88CvSZU/RQ=";
44 })
45 ];
46
47 postPatch = ''
48 patchShebangs nipy/_build_utils/cythoner.py
49 '';
50
51 build-system = [
52 cython
53 meson-python
54 setuptools
55 ninja
56 numpy
57 ];
58
59 dependencies = [
60 nibabel
61 numpy
62 scipy
63 sympy
64 transforms3d
65 ];
66
67 optional-dependencies.optional = [ matplotlib ];
68
69 nativeCheckInputs = [ pytestCheckHook ] ++ optional-dependencies.optional;
70
71 doCheck = false; # partial imports … circular dependencies. needs more time to figure out.
72
73 pythonImportsCheck = [
74 "nipy"
75 "nipy.testing"
76 "nipy.algorithms"
77 ];
78
79 meta = with lib; {
80 homepage = "https://nipy.org/nipy";
81 description = "Software for structural and functional neuroimaging analysis";
82 downloadPage = "https://github.com/nipy/nipy";
83 license = licenses.bsd3;
84 };
85}