pyrox.dev
1{
2 lib,
3 buildPythonPackage,
4 fetchFromGitHub,
5 numpy,
6 pytestCheckHook,
7 pythonOlder,
8 zlib,
9}:
10
11buildPythonPackage rec {
12 pname = "pybigwig";
13 version = "0.3.24";
14 format = "setuptools";
15
16 disabled = pythonOlder "3.9";
17
18 src = fetchFromGitHub {
19 owner = "deeptools";
20 repo = "pyBigWig";
21 tag = version;
22 hash = "sha256-gK3cOwbvQtf+g1H/4x69swqCFdkBwpV7ZOrbE0eANh0=";
23 };
24
25 buildInputs = [ zlib ];
26
27 nativeCheckInputs = [
28 numpy
29 pytestCheckHook
30 ];
31
32 pythonImportsCheck = [ "pyBigWig" ];
33
34 enabledTestPaths = [ "pyBigWigTest/test*.py" ];
35
36 disabledTests = [
37 # Test file is downloaded from GitHub
38 "testAll"
39 "testBigBed"
40 "testFoo"
41 "testNumpyValues"
42 ];
43
44 meta = with lib; {
45 description = "File access to bigBed files, and read and write access to bigWig files";
46 longDescription = ''
47 A Python extension, written in C, for quick access to bigBed files
48 and access to and creation of bigWig files. This extension uses
49 libBigWig for local and remote file access.
50 '';
51 homepage = "https://github.com/deeptools/pyBigWig";
52 changelog = "https://github.com/deeptools/pyBigWig/releases/tag/${src.tag}";
53 license = licenses.mit;
54 maintainers = with maintainers; [ scalavision ];
55 };
56}