pyrox.dev
1{
2 lib,
3 buildPythonPackage,
4 fetchFromGitHub,
5 fetchpatch,
6
7 # build-system
8 poetry-core,
9
10 # dependencies
11 jsonschema,
12 numpy,
13 pydicom,
14 simpleitk,
15
16 # tests
17 pytestCheckHook,
18}:
19
20buildPythonPackage rec {
21 pname = "pydicom-seg";
22 version = "0.4.1";
23 pyproject = true;
24
25 src = fetchFromGitHub {
26 owner = "razorx89";
27 repo = "pydicom-seg";
28 tag = "v${version}";
29 fetchSubmodules = true;
30 hash = "sha256-2Y3fZHKfZqdp5EU8HfVsmJ5JFfVGZuAR7+Kj7qaTiPM=";
31 };
32
33 patches = [
34 # https://github.com/razorx89/pydicom-seg/pull/54
35 (fetchpatch {
36 name = "replace-poetry-with-poetry-core.patch";
37 url = "https://github.com/razorx89/pydicom-seg/commit/ac91eaefe3b0aecfe745869972c08de5350d2b61.patch";
38 hash = "sha256-xBOVjWZPjyQ8gSj6JLe9B531e11TI3FUFFtL+IelZOM=";
39 })
40 ];
41
42 pythonRelaxDeps = [
43 "jsonschema"
44 "numpy"
45 ];
46
47 build-system = [ poetry-core ];
48
49 dependencies = [
50 jsonschema
51 numpy
52 pydicom
53 simpleitk
54 ];
55
56 nativeCheckInputs = [ pytestCheckHook ];
57
58 pythonImportsCheck = [ "pydicom_seg" ];
59
60 meta = {
61 description = "Medical segmentation file reading and writing";
62 homepage = "https://github.com/razorx89/pydicom-seg";
63 changelog = "https://github.com/razorx89/pydicom-seg/releases/tag/v${version}";
64 license = lib.licenses.mit;
65 maintainers = with lib.maintainers; [ bcdarwin ];
66 # ModuleNotFoundError: No module named 'pydicom._storage_sopclass_uids'
67 broken = true;
68 };
69}