pyrox.dev
1{
2 lib,
3 buildPythonPackage,
4 fetchFromGitHub,
5
6 setuptools,
7 cython,
8 oldest-supported-numpy,
9
10 requests,
11 decorator,
12 natsort,
13 numpy,
14 pandas,
15 scipy,
16 h5py,
17 biom-format,
18 statsmodels,
19 patsy,
20 array-api-compat,
21
22 python,
23 pytestCheckHook,
24}:
25
26buildPythonPackage rec {
27 pname = "scikit-bio";
28 version = "0.7.0";
29 pyproject = true;
30
31 src = fetchFromGitHub {
32 owner = "scikit-bio";
33 repo = "scikit-bio";
34 tag = version;
35 hash = "sha256-M0P5DUAMlRTkaIPbxSvO99N3y5eTrkg4NMlkIpGr4/g=";
36 };
37
38 build-system = [
39 setuptools
40 cython
41 oldest-supported-numpy
42 ];
43
44 dependencies = [
45 requests
46 decorator
47 natsort
48 numpy
49 pandas
50 scipy
51 h5py
52 biom-format
53 statsmodels
54 patsy
55 array-api-compat
56 ];
57
58 nativeCheckInputs = [ pytestCheckHook ];
59
60 # only the $out dir contains the built cython extensions, so we run the tests inside there
61 enabledTestPaths = [ "${placeholder "out"}/${python.sitePackages}/skbio" ];
62
63 pythonImportsCheck = [ "skbio" ];
64
65 meta = {
66 homepage = "http://scikit-bio.org/";
67 description = "Data structures, algorithms and educational resources for bioinformatics";
68 license = lib.licenses.bsd3;
69 maintainers = with lib.maintainers; [ tomasajt ];
70 };
71}