pyrox.dev
1{
2 lib,
3 stdenv,
4 python,
5 buildPythonPackage,
6 fetchFromGitHub,
7 cython,
8 pybind11,
9 tiledb,
10 numpy,
11 wheel,
12 isPy3k,
13 setuptools-scm,
14 psutil,
15 pandas,
16 cmake,
17 ninja,
18 scikit-build-core,
19 packaging,
20 pytest,
21 hypothesis,
22 pyarrow,
23}:
24
25buildPythonPackage rec {
26 pname = "tiledb";
27 version = "0.35.0";
28 format = "pyproject";
29
30 src = fetchFromGitHub {
31 owner = "TileDB-Inc";
32 repo = "TileDB-Py";
33 tag = version;
34 hash = "sha256-uxfF2uyGlO1Dfsrw0hxuU6LmymWXmuvOe+9DEY8BEdQ=";
35 };
36
37 build-system = [
38 cython
39 pybind11
40 setuptools-scm
41 scikit-build-core
42 packaging
43 cmake
44 ninja
45 ];
46
47 buildInputs = [ tiledb ];
48
49 propagatedBuildInputs = [
50 numpy
51 ];
52
53 nativeCheckInputs = [
54 psutil
55 # optional
56 pandas
57 pytest
58 hypothesis
59 pyarrow
60 ];
61
62 TILEDB_PATH = tiledb;
63
64 disabled = !isPy3k; # Not bothering with python2 anymore
65
66 dontUseCmakeConfigure = true;
67
68 # We have to run pytest from a diffferent directory to force it to import tiledb from $out
69 # otherwise it cannot be imported because extension modules are not compiled in sources
70 checkPhase = ''
71 pushd "$TMPDIR"
72 ${python.interpreter} -m pytest --pyargs tiledb${lib.optionalString stdenv.isDarwin " -k 'not test_ctx_thread_cleanup and not test_array'"}
73 popd
74 '';
75
76 pythonImportsCheck = [ "tiledb" ];
77
78 meta = {
79 description = "Python interface to the TileDB storage manager";
80 homepage = "https://github.com/TileDB-Inc/TileDB-Py";
81 license = lib.licenses.mit;
82 };
83}