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feat(beads): initialize issue tracker for agent memory

Set up Beads dependency-aware issue tracker to provide persistent
memory and task tracking across agent sessions. Issues will use
prefix 'Coves-1, Coves-2, etc.' and sync via JSONL in git.

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude <noreply@anthropic.com>

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.beads/.gitignore
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# SQLite databases
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*.db
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*.db-journal
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*.db-wal
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*.db-shm
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# Daemon runtime files
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daemon.lock
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daemon.log
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daemon.pid
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bd.sock
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# Legacy database files
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db.sqlite
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bd.db
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# Keep JSONL exports and config (source of truth for git)
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!*.jsonl
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!metadata.json
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!config.json
+56
.beads/config.yaml
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# Beads Configuration File
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# This file configures default behavior for all bd commands in this repository
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# All settings can also be set via environment variables (BD_* prefix)
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# or overridden with command-line flags
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# Issue prefix for this repository (used by bd init)
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# If not set, bd init will auto-detect from directory name
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# Example: issue-prefix: "myproject" creates issues like "myproject-1", "myproject-2", etc.
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# issue-prefix: ""
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# Use no-db mode: load from JSONL, no SQLite, write back after each command
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# When true, bd will use .beads/issues.jsonl as the source of truth
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# instead of SQLite database
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# no-db: false
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# Disable daemon for RPC communication (forces direct database access)
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# no-daemon: false
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# Disable auto-flush of database to JSONL after mutations
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# no-auto-flush: false
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# Disable auto-import from JSONL when it's newer than database
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# no-auto-import: false
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# Enable JSON output by default
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# json: false
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# Default actor for audit trails (overridden by BD_ACTOR or --actor)
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# actor: ""
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# Path to database (overridden by BEADS_DB or --db)
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# db: ""
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# Auto-start daemon if not running (can also use BEADS_AUTO_START_DAEMON)
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# auto-start-daemon: true
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# Debounce interval for auto-flush (can also use BEADS_FLUSH_DEBOUNCE)
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# flush-debounce: "5s"
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# Multi-repo configuration (experimental - bd-307)
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# Allows hydrating from multiple repositories and routing writes to the correct JSONL
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# repos:
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# primary: "." # Primary repo (where this database lives)
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# additional: # Additional repos to hydrate from (read-only)
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# - ~/beads-planning # Personal planning repo
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# - ~/work-planning # Work planning repo
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# Integration settings (access with 'bd config get/set')
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# These are stored in the database, not in this file:
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# - jira.url
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# - jira.project
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# - linear.url
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# - linear.api-key
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# - github.org
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# - github.repo
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# - sync.branch - Git branch for beads commits (use BEADS_SYNC_BRANCH env var or bd config set)
.beads/issues.jsonl

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+4
.beads/metadata.json
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{
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"database": "beads.db",
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"jsonl_export": "beads.jsonl"
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}
+3
.gitattributes
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# Use bd merge for beads JSONL files
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.beads/beads.jsonl merge=beads