commit 0ae547b195483d2cf67de5635b93b84f0add6545 · pyrox.dev/nixpkgs

+8 -2

pkgs/by-name/sn/snakemake/package.nix

···

       10
        
       

     

       11
        
       python3Packages.buildPythonApplication rec {

     

       12
        
         pname = "snakemake";

     

       13
       -
         version = "9.5.1";

     

       14
        
         pyproject = true;

     

       15
        
       

     

       16
        
         src = fetchFromGitHub {

     

       17
        
           owner = "snakemake";

     

       18
        
           repo = "snakemake";

     

       19
        
           tag = "v${version}";

     

       20
       -
           hash = "sha256-cSFqPSLeM7hw1bxQZ2FhlHUP+O3iyrwBz4+Jz90Zck8=";

     

       21
        
         };

     

       22
        
       

     

       23
        
         postPatch = ''

     
···

       58
        
           snakemake-interface-logger-plugins

     

       59
        
           snakemake-interface-storage-plugins

     

       60
        
           snakemake-interface-report-plugins

     

       0
        
       
     

       61
        
           stopit

     

       62
        
           tabulate

     

       63
        
           throttler

     
···

       140
        
           # Requires snakemake-storage-plugin-http

     

       141
        
           "test_keep_local"

     

       142
        
           "test_retrieve"

     

       0
        
       
     

       0
        
       
     

       0
        
       
     

       0
        
       
     

       0
        
       
     

       143
        
         ]

     

       144
        
         ++ lib.optionals stdenv.hostPlatform.isDarwin [

     

       145
        
           # Unclear failure:

···

       10
        
       

     

       11
        
       python3Packages.buildPythonApplication rec {

     

       12
        
         pname = "snakemake";

     

       13
       +
         version = "9.11.8";

     

       14
        
         pyproject = true;

     

       15
        
       

     

       16
        
         src = fetchFromGitHub {

     

       17
        
           owner = "snakemake";

     

       18
        
           repo = "snakemake";

     

       19
        
           tag = "v${version}";

     

       20
       +
           hash = "sha256-fQCpQ3LB0Q1USZ9YTEniR5iKq68Zri9+14zqa/jzO2o=";

     

       21
        
         };

     

       22
        
       

     

       23
        
         postPatch = ''

     
···

       58
        
           snakemake-interface-logger-plugins

     

       59
        
           snakemake-interface-storage-plugins

     

       60
        
           snakemake-interface-report-plugins

     

       61
       +
           snakemake-interface-scheduler-plugins

     

       62
        
           stopit

     

       63
        
           tabulate

     

       64
        
           throttler

     
···

       141
        
           # Requires snakemake-storage-plugin-http

     

       142
        
           "test_keep_local"

     

       143
        
           "test_retrieve"

     

       144
       +
       

     

       145
       +
           # Requires conda

     

       146
       +
           "test_jupyter_notebook"

     

       147
       +
           "test_jupyter_notebook_nbconvert"

     

       148
       +
           "test_jupyter_notebook_draft"

     

       149
        
         ]

     

       150
        
         ++ lib.optionals stdenv.hostPlatform.isDarwin [

     

       151
        
           # Unclear failure:

+11 -14

pkgs/development/python-modules/snakemake-interface-common/default.nix

···

       4
        
         buildPythonPackage,

     

       5
        
         configargparse,

     

       6
        
         fetchFromGitHub,

     

       7
       -
         poetry-core,

     

       8
       -
         pythonOlder,

     

       9
       -
         pytestCheckHook,

     

       10
        
       }:

     

       11
        
       

     

       12
        
       buildPythonPackage rec {

     

       13
        
         pname = "snakemake-interface-common";

     

       14
       -
         version = "1.17.4";

     

       15
        
         pyproject = true;

     

       16
        
       

     

       17
       -
         disabled = pythonOlder "3.8";

     

       18
       -
       

     

       19
        
         src = fetchFromGitHub {

     

       20
        
           owner = "snakemake";

     

       21
        
           repo = "snakemake-interface-common";

     

       22
        
           tag = "v${version}";

     

       23
       -
           hash = "sha256-PMEs7yeVfSnZKbabLrbXfIKCIPteNV1wzbt9RIDG3qU=";

     

       24
        
         };

     

       25
        
       

     

       26
       -
         build-system = [ poetry-core ];

     

       27
        
       

     

       28
        
         dependencies = [

     

       29
        
           argparse-dataclass

     

       30
        
           configargparse

     

       31
        
         ];

     

       32
        
       

     

       33
       -
         nativeCheckInputs = [ pytestCheckHook ];

     

       34
        
       

     

       35
       -
         pythonImportsCheck = [ "snakemake_interface_common" ];

     

       0
        
       
     

       36
        
       

     

       37
       -
         enabledTestPaths = [ "tests/tests.py" ];

     

       38
        
       

     

       39
       -
         meta = with lib; {

     

       40
        
           description = "Common functions and classes for Snakemake and its plugins";

     

       41
        
           homepage = "https://github.com/snakemake/snakemake-interface-common";

     

       42
        
           changelog = "https://github.com/snakemake/snakemake-interface-common/releases/tag/v${version}";

     

       43
       -
           license = licenses.mit;

     

       44
       -
           maintainers = with maintainers; [ veprbl ];

     

       45
        
         };

     

       46
        
       }

···

       4
        
         buildPythonPackage,

     

       5
        
         configargparse,

     

       6
        
         fetchFromGitHub,

     

       7
       +
         setuptools,

     

       0
        
       
     

       0
        
       
     

       8
        
       }:

     

       9
        
       

     

       10
        
       buildPythonPackage rec {

     

       11
        
         pname = "snakemake-interface-common";

     

       12
       +
         version = "1.22.0";

     

       13
        
         pyproject = true;

     

       14
        
       

     

       0
        
       
     

       0
        
       
     

       15
        
         src = fetchFromGitHub {

     

       16
        
           owner = "snakemake";

     

       17
        
           repo = "snakemake-interface-common";

     

       18
        
           tag = "v${version}";

     

       19
       +
           hash = "sha256-DxbB/UaBkLbG18CGHyDMo7dmRlVY2tD3BhO0MShbnq4=";

     

       20
        
         };

     

       21
        
       

     

       22
       +
         build-system = [ setuptools ];

     

       23
        
       

     

       24
        
         dependencies = [

     

       25
        
           argparse-dataclass

     

       26
        
           configargparse

     

       27
        
         ];

     

       28
        
       

     

       29
       +
         pythonImportsCheck = [ "snakemake_interface_common" ];

     

       30
        
       

     

       31
       +
         # test_snakemake_version: No module named 'snakemake'

     

       32
       +
         # nativeCheckInputs = [ pytestCheckHook ];

     

       33
        
       

     

       34
       +
         # enabledTestPaths = [ "tests/tests.py" ];

     

       35
        
       

     

       36
       +
         meta = {

     

       37
        
           description = "Common functions and classes for Snakemake and its plugins";

     

       38
        
           homepage = "https://github.com/snakemake/snakemake-interface-common";

     

       39
        
           changelog = "https://github.com/snakemake/snakemake-interface-common/releases/tag/v${version}";

     

       40
       +
           license = lib.licenses.mit;

     

       41
       +
           maintainers = with lib.maintainers; [ veprbl ];

     

       42
        
         };

     

       43
        
       }

+42

pkgs/development/python-modules/snakemake-interface-scheduler-plugins/default.nix

···

       1
       +
       {

     

       2
       +
         lib,

     

       3
       +
         buildPythonPackage,

     

       4
       +
         fetchFromGitHub,

     

       5
       +
         hatchling,

     

       6
       +
         snakemake-interface-common,

     

       7
       +
       }:

     

       8
       +
       

     

       9
       +
       let

     

       10
       +
         version = "2.0.1";

     

       11
       +
       

     

       12
       +
         src = fetchFromGitHub {

     

       13
       +
           owner = "snakemake";

     

       14
       +
           repo = "snakemake-interface-scheduler-plugins";

     

       15
       +
           tag = "v${version}";

     

       16
       +
           hash = "sha256-Z/rJGkby9AcYB+Gil00xhbrySChqEIEOtzLyzQPhObk=";

     

       17
       +
         };

     

       18
       +
       in

     

       19
       +
       buildPythonPackage {

     

       20
       +
         pname = "snakemake-interface-scheduler-plugins";

     

       21
       +
         inherit version src;

     

       22
       +
         pyproject = true;

     

       23
       +
       

     

       24
       +
         build-system = [ hatchling ];

     

       25
       +
       

     

       26
       +
         dependencies = [ snakemake-interface-common ];

     

       27
       +
       

     

       28
       +
         pythonImportsCheck = [ "snakemake_interface_scheduler_plugins" ];

     

       29
       +
       

     

       30
       +
         # test_scheduler: No module named 'snakemake'

     

       31
       +
         # nativeCheckInputs = [ pytestCheckHook ];

     

       32
       +
       

     

       33
       +
         # enabledTestPaths = [ "tests/tests.py" ];

     

       34
       +
       

     

       35
       +
         meta = {

     

       36
       +
           description = "Provides a stable interface for interactions between Snakemake and its scheduler plugins";

     

       37
       +
           homepage = "https://github.com/snakemake/snakemake-interface-scheduler-plugins";

     

       38
       +
           changelog = "https://github.com/snakemake/snakemake-interface-scheduler-plugins/blob/${src.rev}/CHANGELOG.md";

     

       39
       +
           license = lib.licenses.mit;

     

       40
       +
           maintainers = with lib.maintainers; [ kyehn ];

     

       41
       +
         };

     

       42
       +
       }

pkgs/top-level/python-packages.nix

···

       17032
        
           callPackage ../development/python-modules/snakemake-interface-report-plugins

     

       17033
        
             { };

     

       17034
        
       

     

       0
        
       
     

       0
        
       
     

       0
        
       
     

       0
        
       
     

       17035
        
         snakemake-interface-storage-plugins =

     

       17036
        
           callPackage ../development/python-modules/snakemake-interface-storage-plugins

     

       17037
        
             { };

···

       17032
        
           callPackage ../development/python-modules/snakemake-interface-report-plugins

     

       17033
        
             { };

     

       17034
        
       

     

       17035
       +
         snakemake-interface-scheduler-plugins =

     

       17036
       +
           callPackage ../development/python-modules/snakemake-interface-scheduler-plugins

     

       17037
       +
             { };

     

       17038
       +
       

     

       17039
        
         snakemake-interface-storage-plugins =

     

       17040
        
           callPackage ../development/python-modules/snakemake-interface-storage-plugins

     

       17041
        
             { };