···

       
2
       
2
       
 
       
  stdenv,

     

       
3
       
3
       
 
       
  lib,

     

       
4
       
4
       
 
       
  buildPythonPackage,

     

       
5
       
5
       
-
       
  fetchPypi,

     

       
5
       
5
       
+
       
  fetchFromGitHub,

     

       
6
       
6
       
 
       
  cython,

     

       
7
       
7
       
 
       
  ecos,

     

       
8
       
8
       
+
       
  eigen,

     

       
8
       
9
       
 
       
  joblib,

     

       
9
       
10
       
 
       
  numexpr,

     

       
10
       
11
       
 
       
  numpy,

     
···

       
18
       
19
       
 
       


     

       
19
       
20
       
 
       
buildPythonPackage rec {

     

       
20
       
21
       
 
       
  pname = "scikit-survival";

     

       
21
       
21
       
-
       
  version = "0.23.0";

     

       
22
       
22
       
+
       
  version = "0.23.1";

     

       
22
       
23
       
 
       
  pyproject = true;

     

       
23
       
24
       
 
       


     

       
24
       
24
       
-
       
  src = fetchPypi {

     

       
25
       
25
       
-
       
    inherit pname version;

     

       
26
       
26
       
-
       
    hash = "sha256-JFI3SDOK74vQdoUOStYlc4e0VHps97KjV3a1NQSN6E0=";

     

       
25
       
25
       
+
       
  src = fetchFromGitHub {

     

       
26
       
26
       
+
       
    owner = "sebp";

     

       
27
       
27
       
+
       
    repo = "scikit-survival";

     

       
28
       
28
       
+
       
    rev = "refs/tags/v${version}";

     

       
29
       
29
       
+
       
    hash = "sha256-6902chXALa73/kTJ5UwV4CrB7/7wn+QXKpp2ej/Dnk8=";

     

       
27
       
30
       
 
       
  };

     

       
28
       
31
       
 
       


     

       
29
       
32
       
 
       
  nativeBuildInputs = [

     
···

       
46
       
49
       
 
       


     

       
47
       
50
       
 
       
  nativeCheckInputs = [ pytestCheckHook ];

     

       
48
       
51
       
 
       


     

       
49
       
49
       
-
       
  # treat numpy versions as lower bounds, same as setuptools build

     

       
52
       
52
       
+
       
  # can remove scikit-learn after 0.23.1

     

       
50
       
53
       
 
       
  postPatch = ''

     

       
51
       
51
       
-
       
    sed -i 's/numpy==/numpy>=/' pyproject.toml

     

       
54
       
54
       
+
       
    ln -s ${lib.getInclude eigen}/include/eigen3/Eigen \

     

       
55
       
55
       
+
       
      sksurv/linear_model/src/eigen

     

       
56
       
56
       
+
       
    sed -i -e 's/numpy>=2.0.0/numpy/' \

     

       
57
       
57
       
+
       
       -e 's/scikit-learn~=1.4.0/scikit-learn/' pyproject.toml

     

       
52
       
58
       
 
       
  '';

     

       
53
       
59
       
 
       


     

       
54
       
60
       
 
       
  # Hack needed to make pytest + cython work