commit 37aff96daf96ff84af9ab3a5a1b4a7f6f0144933 · pyrox.dev/nixpkgs

+65

pkgs/applications/science/math/ripser/default.nix

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       { stdenv, fetchurl, fetchFromGitHub

     

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       , assembleReductionMatrix ? false

     

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       , useCoefficients ? false

     

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       , indicateProgress ? false

     

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       , useGoogleHashmap ? false, sparsehash ? null

     

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       , fileFormat ? "lowerTriangularCsv"

     

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       }:

     

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       with stdenv.lib;

     

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       assert elem fileFormat ["lowerTriangularCsv" "upperTriangularCsv" "dipha"];

     

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       assert useGoogleHashmap -> sparsehash != null;

     

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       let

     

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         inherit (stdenv.lib) optional;

     

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       in

     

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       stdenv.mkDerivation {

     

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         name = "ripser";

     

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         version = "1.0";

     

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         src = fetchFromGitHub {

     

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           owner = "Ripser";

     

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           repo = "ripser";

     

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           rev = "f69c6af6ca6883dd518c48faf41cf8901c379598";

     

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           sha256 = "1mw2898s7l29hgajsaf75bs9bjn2sn4g2mvmh41a602jpwp9r0rz";

     

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         };

     

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         #Patch from dev branch to make compilation work.

     

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         #Will be removed when it gets merged into master.

     

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         patches = [(fetchurl {

     

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           url = https://github.com/Ripser/ripser/commit/dc78d8ce73ee35f3828f0aad67a4e53620277ebf.patch;

     

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           sha256 = "1y93aqpqz8fm1cxxrf90dhh67im3ndkr8dnxgbw5y96296n4r924";

     

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         })];

     

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         buildInputs = optional useGoogleHashmap sparsehash;

     

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         buildFlags = [

     

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           "-std=c++11"

     

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           "-Ofast"

     

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           "-D NDEBUG"

     

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         ]

     

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         ++ optional assembleReductionMatrix "-D ASSEMBLE_REDUCTION_MATRIX"

     

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         ++ optional useCoefficients "-D USE_COEFFICIENTS"

     

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         ++ optional indicateProgress "-D INDICATE_PROGRESS"

     

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         ++ optional useGoogleHashmap "-D USE_GOOGLE_HASHMAP"

     

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         ++ optional (fileFormat == "lowerTriangularCsv") "-D FILE_FORMAT_LOWER_TRIANGULAR_CSV"

     

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         ++ optional (fileFormat == "upperTriangularCsv") "-D FILE_FORMAT_UPPER_TRIANGULAR_CSV"

     

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         ++ optional (fileFormat == "dipha") "-D FILE_FORMAT_DIPHA"

     

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         ;

     

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         buildPhase = "c++ ripser.cpp -o ripser $buildFlags";

     

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         installPhase = ''

     

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           mkdir -p $out/bin

     

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           cp ripser $out/bin

     

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         '';

     

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         meta = {

     

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           description = "A lean C++ code for the computation of Vietoris–Rips persistence barcodes";

     

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           homepage = "https://github.com/Ripser/ripser";

     

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           license = stdenv.lib.licenses.lgpl3;

     

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           maintainers = with stdenv.lib.maintainers; [erikryb];

     

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           platforms = stdenv.lib.platforms.linux;

     

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         };

     

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       }

pkgs/top-level/all-packages.nix

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         ricochet = qt55.callPackage ../applications/networking/instant-messengers/ricochet { };

     

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         ripser = callPackage ../applications/science/math/ripser { };

     

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         rkt = callPackage ../applications/virtualization/rkt { };

     

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         rofi = callPackage ../applications/misc/rofi { };