···

       
1
       
1
       
-
       
{ lib

     

       
2
       
2
       
-
       
, buildPythonPackage

     

       
3
       
3
       
-
       
, fetchPypi

     

       
4
       
4
       
-
       
, pyvcf

     

       
5
       
5
       
-
       
}:

     

       
6
       
6
       
-
       


     

       
7
       
7
       
-
       
buildPythonPackage rec {

     

       
8
       
8
       
-
       
  pname = "ACEBinf";

     

       
9
       
9
       
-
       
  version = "1.0.2";

     

       
10
       
10
       
-
       


     

       
11
       
11
       
-
       
  src = fetchPypi {

     

       
12
       
12
       
-
       
    inherit pname version;

     

       
13
       
13
       
-
       
    sha256 = "1168pny671l6zfm2vv1pwspnflmzi7f4v8yldjl7zlz0b9cm5zlz";

     

       
14
       
14
       
-
       
  };

     

       
15
       
15
       
-
       


     

       
16
       
16
       
-
       
  buildInputs = [ pyvcf ];

     

       
17
       
17
       
-
       


     

       
18
       
18
       
-
       
  # no tests

     

       
19
       
19
       
-
       
  doCheck = false;

     

       
20
       
20
       
-
       
  pythonImportsCheck = [ "acebinf" ];

     

       
21
       
21
       
-
       


     

       
22
       
22
       
-
       
  meta = with lib; {

     

       
23
       
23
       
-
       
    homepage = "https://github.com/ACEnglish/acebinf";

     

       
24
       
24
       
-
       
    description = "Collection of simple utilities used when building bioinformatics tools";

     

       
25
       
25
       
-
       
    license = licenses.unlicense;

     

       
26
       
26
       
-
       
    maintainers = with maintainers; [ ris ];

     

       
27
       
27
       
-
       
  };

     

       
28
       
28
       
-
       
}

     

···

       
1
       
1
       
-
       
{ lib

     

       
2
       
2
       
-
       
, buildPythonPackage

     

       
3
       
3
       
-
       
, fetchFromGitHub

     

       
4
       
4
       
-
       
, pytest

     

       
5
       
5
       
-
       
}:

     

       
6
       
6
       
-
       


     

       
7
       
7
       
-
       
buildPythonPackage rec {

     

       
8
       
8
       
-
       
  pname = "PyVCF";

     

       
9
       
9
       
-
       
  version = "0.6.8";

     

       
10
       
10
       
-
       


     

       
11
       
11
       
-
       
  src = fetchFromGitHub {

     

       
12
       
12
       
-
       
    owner = "jamescasbon";

     

       
13
       
13
       
-
       
    repo = "PyVCF";

     

       
14
       
14
       
-
       
    rev = "476169cd457ba0caa6b998b301a4d91e975251d9";

     

       
15
       
15
       
-
       
    sha256 = "0qf9lwj7r2hjjp4bd4vc7nayrhblfm4qcqs4dbd43a6p4bj2jv5p";

     

       
16
       
16
       
-
       
  };

     

       
17
       
17
       
-
       


     

       
18
       
18
       
-
       
  nativeCheckInputs = [ pytest ];

     

       
19
       
19
       
-
       


     

       
20
       
20
       
-
       
  meta = with lib; {

     

       
21
       
21
       
-
       
    homepage = "https://pyvcf.readthedocs.io/en/latest/index.html";

     

       
22
       
22
       
-
       
    description = "A VCF (Variant Call Format) Parser for Python, supporting version 4.0 and 4.1";

     

       
23
       
23
       
-
       
    license = licenses.bsd3;

     

       
24
       
24
       
-
       
    maintainers = with maintainers; [ scalavision ];

     

       
25
       
25
       
-
       
    longDescription = ''

     

       
26
       
26
       
-
       
      The intent of this module is to mimic the csv module in the Python stdlib,

     

       
27
       
27
       
-
       
      as opposed to more flexible serialization formats like JSON or YAML.

     

       
28
       
28
       
-
       
      vcf will attempt to parse the content of each record based on the data

     

       
29
       
29
       
-
       
      types specified in the meta-information lines

     

       
30
       
30
       
-
       
    '';

     

       
31
       
31
       
-
       
    broken = true; # uses the 2to3 feature, that got removed in setuptools 0.58

     

       
32
       
32
       
-
       
  };

     

       
33
       
33
       
-
       
}

     

···

       
34
       
34
       
 
       


     

       
35
       
35
       
 
       
mapAliases ({

     

       
36
       
36
       
 
       
  abodepy = jaraco-abode; # added 2023-02-01

     

       
37
       
37
       
+
       
  acebinf = throw "acebinf has been removed because it is abandoned and broken."; # Added 2023-05-19

     

       
37
       
38
       
 
       
  aioh2 = throw "aioh2 has been removed because it is abandoned and broken."; # Added 2022-03-30

     

       
38
       
39
       
 
       
  ansible-base = throw "ansible-base has been removed, because it is end of life"; # added 2022-03-30

     

       
39
       
40
       
 
       
  ansible-doctor = throw "ansible-doctor has been promoted to a top-level attribute"; # Added 2023-05-16

     
···

       
250
       
251
       
 
       
  pytorchWithCuda = torchWithCuda; # added 2022-09-30

     

       
251
       
252
       
 
       
  pytorchWithoutCuda = torchWithoutCuda; # added 2022-09-30

     

       
252
       
253
       
 
       
  pytwitchapi = twitchapi; # added 2022-03-07

     

       
254
       
254
       
+
       
  pyvcf = throw "pyvcf has been removed, it was using setuptools 2to3 translation feature, which has been removed in setuptools 58"; # added 2023-05-19

     

       
253
       
255
       
 
       
  PyVirtualDisplay = pyvirtualdisplay; # added 2023-02-19

     

       
254
       
256
       
 
       
  qasm2image = throw "qasm2image is no longer maintained (since November 2018), and is not compatible with the latest pythonPackages.qiskit versions."; # added 2020-12-09

     

       
255
       
257
       
 
       
  Quandl = quandl; # added 2023-02-19

     

···

       
28
       
28
       
 
       


     

       
29
       
29
       
 
       
  accupy = callPackage ../development/python-modules/accupy { };

     

       
30
       
30
       
 
       


     

       
31
       
31
       
-
       
  acebinf = callPackage ../development/python-modules/acebinf { };

     

       
32
       
32
       
-
       


     

       
33
       
31
       
 
       
  acme = callPackage ../development/python-modules/acme { };

     

       
34
       
32
       
 
       


     

       
35
       
33
       
 
       
  acme-tiny = callPackage ../development/python-modules/acme-tiny { };

     
···

       
10044
       
10042
       
 
       
  py-vapid = callPackage ../development/python-modules/py-vapid { };

     

       
10045
       
10043
       
 
       


     

       
10046
       
10044
       
 
       
  pyvcd = callPackage ../development/python-modules/pyvcd { };

     

       
10047
       
10047
       
-
       


     

       
10048
       
10048
       
-
       
  pyvcf = callPackage ../development/python-modules/pyvcf { };

     

       
10049
       
10045
       
 
       


     

       
10050
       
10046
       
 
       
  pyvera = callPackage ../development/python-modules/pyvera { };

     

       
10051
       
10047