commit 4640bdd3cd0bc09b7e57bddb9da098023aadbfa6 · pyrox.dev/nixpkgs

+37 -11
pkgs/development/python-modules/hdbscan/default.nix
···

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       {

     

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         lib,

     

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         buildPythonPackage,

     

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         fetchFromGitHub,

     

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         fetchpatch,

     

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         cython,

     

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         numpy,

     

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         pytestCheckHook,

     

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         scipy,

     

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         scikit-learn,

     

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         fetchPypi,

     

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         joblib,

     

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         six,

     

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         # test

     

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         pytestCheckHook,

     

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       }:

     

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       buildPythonPackage rec {

     
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         version = "0.8.40";

     

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         format = "setuptools";

     

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         src = fetchPypi {

     

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           inherit pname version;

     

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           hash = "sha256-yeOD/xe+7gWRB1/2XVJL2ltaNd+wHSGCRae6MMjUihc=";

     

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         src = fetchFromGitHub {

     

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           owner = "scikit-learn-contrib";

     

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           repo = "hdbscan";

     

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           tag = "release-${version}";

     

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           hash = "sha256-xsBlmSQU47e+M+nRqUXdWKS7Rtj2QZ1UWLAvjSQOJ0Q=";

     

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         };

     

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         patches = [

     

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           (fetchpatch {

     

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             # Replace obsolete use of assert_raises with pytest.raises

     

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             name = "replace-assert_raises";

     

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             url = "https://github.com/scikit-learn-contrib/hdbscan/pull/667/commits/04d6a4dcdcd2bb2597419b8aa981d7620765809f.patch";

     

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             hash = "sha256-z/u5b2rNPKOCe+3/GVE8rMB5ajeU5PrvLVesjEgj9TA=";

     

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           })

     

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         ];

     

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         pythonRemoveDeps = [ "cython" ];

     

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         nativeBuildInputs = [

     

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           cython

     

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         ];

     

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         propagatedBuildInputs = [

     

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           joblib

     

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           numpy

     

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           scipy

     

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           scikit-learn

     

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           joblib

     

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           scipy

     

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           six

     

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         ];

     

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         preCheck = ''

     

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           cd hdbscan/tests

     

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           rm __init__.py

     

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         '';

     

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         nativeCheckInputs = [ pytestCheckHook ];

     

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         disabledTests = [

     

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           # known flaky tests: https://github.com/scikit-learn-contrib/hdbscan/issues/420

     

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           "test_mem_vec_diff_clusters"

     
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           # more flaky tests https://github.com/scikit-learn-contrib/hdbscan/issues/570

     

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           "test_hdbscan_boruvka_balltree"

     

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           "test_hdbscan_best_balltree_metric"

     

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           # "got an unexpected keyword argument"

     

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           "test_hdbscan_badargs"

     

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         ];

     

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         disabledTestPaths = [

     

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           # joblib.externals.loky.process_executor.BrokenProcessPool:

     

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           "test_branches.py"

     

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         ];

     

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         pythonImportsCheck = [ "hdbscan" ];

     

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         meta = with lib; {

     

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         meta = {

     

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           description = "Hierarchical Density-Based Spatial Clustering of Applications with Noise, a clustering algorithm with a scikit-learn compatible API";

     

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           homepage = "https://github.com/scikit-learn-contrib/hdbscan";

     

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           license = licenses.bsd3;

     

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           changelog = "https://github.com/scikit-learn-contrib/hdbscan/releases/tag/release-${version}";

     

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           license = lib.licenses.bsd3;

     

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           maintainers = [ ];

     

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         };

     

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       }