commit 5309818bf744a166a236ee2f829c154975cf6bcc · pyrox.dev/nixpkgs

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doc/languages-frameworks/r.section.md
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       ## Updating the package set {#updating-the-package-set}

     

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       There is a script and associated environment for regenerating the package

     

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       sets and synchronising the rPackages tree to the current CRAN and matching

     

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       BIOC release. These scripts are found in the `pkgs/development/r-modules`

     

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       directory and executed as follows:

     

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       ```bash

     

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       nix-shell generate-shell.nix

     

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       mv bioc-experiment-packages.nix.new bioc-experiment-packages.nix

     

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       ```

     

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       `generate-r-packages.R <repo>` reads  `<repo>-packages.nix`, therefor the renaming.

     

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       `generate-r-packages.R <repo>` reads  `<repo>-packages.nix`, therefore

     

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       the renaming.

     

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       Some packages require overrides to specify external dependencies or other

     

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       patches and special requirements. These overrides are specified in the

     

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       `pkgs/development/r-modules/default.nix` file. As the `*-packages.nix`

     

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       contents are automatically generated it should not be edited and broken

     

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       builds should be addressed using overrides.