commit 9ff12307de456529d1c6c34183c511e66f9927d1 · pyrox.dev/nixpkgs

+2 -20

pkgs/development/python-modules/highdicom/default.nix

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         numpy,

     

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         pillow,

     

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         pydicom,

     

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         pyjpegls,

     

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         pylibjpeg,

     

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         pylibjpeg-libjpeg,

     

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         pylibjpeg-openjpeg,

     
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           numpy

     

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           pillow

     

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           pydicom

     

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           pyjpegls

     

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           typing-extensions

     

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         ];

     

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             pylibjpeg-openjpeg

     

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           ];

     

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         };

     

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       -
       

     

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         pythonRemoveDeps = [

     

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           "pyjpegls" # not directly used

     

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         ];

     

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         nativeCheckInputs = [ pytestCheckHook ] ++ optional-dependencies.libjpeg;

     

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         preCheck = ''

     
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           mkdir -p $HOME/.pydicom/

     

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           ln -s ${pydicom.passthru.pydicom-data}/data_store/data $HOME/.pydicom/data

     

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         '';

     

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         disabledTests = [

     

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           # require pyjpegls

     

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           "test_construction_10"

     

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           "test_jpegls_monochrome"

     

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           "test_jpegls_rgb"

     

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           "test_jpeglsnearlossless_monochrome"

     

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           "test_jpeglsnearlossless_rgb"

     

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           "test_multi_frame_sm_image_ushort_encapsulated_jpegls"

     

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           "test_monochrome_jpegls"

     

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           "test_monochrome_jpegls_near_lossless"

     

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           "test_rgb_jpegls"

     

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           "test_construction_autotile"

     

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           "test_pixel_types_fractional"

     

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           "test_pixel_types_labelmap"

     

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         ];

     

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         pythonImportsCheck = [

     

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           "highdicom"

+2 -1

pkgs/development/python-modules/pydicom/default.nix

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         # optional/test dependencies

     

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         gdcm,

     

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         pillow,

     

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         pyjpegls,

     

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         pylibjpeg-libjpeg,

     

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         writableTmpDirAsHomeHook,

     

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       }:

     
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         optional-dependencies = {

     

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           pixeldata = [

     

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             pillow

     

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             #pyjpegls # not in nixpkgs

     

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             pyjpegls

     

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             #pylibjpeg.optional-dependencies.openjpeg # infinite recursion

     

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             #pylibjpeg.optional-dependencies.rle # not in nixpkgs

     

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             pylibjpeg-libjpeg

+55

pkgs/development/python-modules/pyjpegls/default.nix

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       {

     

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         lib,

     

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         buildPythonPackage,

     

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         fetchFromGitHub,

     

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         charls,

     

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         cython,

     

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         numpy,

     

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         pillow,

     

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         setuptools,

     

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         pytestCheckHook,

     

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       }:

     

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       buildPythonPackage rec {

     

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         pname = "pyjpegls";

     

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         version = "1.5.1";

     

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         pyproject = true;

     

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         src = fetchFromGitHub {

     

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           owner = "pydicom";

     

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           repo = "pyjpegls";

     

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           tag = "v${version}";

     

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           hash = "sha256-ha/nYvfzgoZDpVolMKMG9ZXqojy6x/2oPcvbWDvdKk4=";

     

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         };

     

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         # replace vendored 'charls' submodule with Nixpkgs's:

     

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         postPatch = ''

     

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           rmdir lib/charls

     

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           cp -ar ${charls.src} lib/charls

     

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         '';

     

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         pythonRelaxDeps = [ "numpy" ];

     

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         build-system = [

     

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           cython

     

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           numpy

     

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           setuptools

     

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         ];

     

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         dependencies = [

     

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           numpy

     

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           pillow

     

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         ];

     

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         pythonImportsCheck = [ "jpeg_ls" ];

     

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         nativeCheckInputs = [ pytestCheckHook ];

     

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         meta = {

     

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           description = "JPEG-LS for Python via CharLS C++ Library";

     

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           homepage = "https://github.com/pydicom/pyjpegls";

     

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           changelog = "https://github.com/pydicom/pyjpegls/releases/tag/v${src.tag}";

     

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           license = lib.licenses.mit;

     

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           maintainers = with lib.maintainers; [ bcdarwin ];

     

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         };

     

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       }

pkgs/top-level/python-packages.nix

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         pyjnius = callPackage ../development/python-modules/pyjnius { };

     

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         pyjpegls = callPackage ../development/python-modules/pyjpegls { };

     

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         pyjson5 = callPackage ../development/python-modules/pyjson5 { };

     

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         pyjsparser = callPackage ../development/python-modules/pyjsparser { };