commit a2c2cc0e0152ff65ebcf364cdce69283a1939184 · pyrox.dev/nixpkgs

+81

pkgs/development/python-modules/multiscale-spatial-image/default.nix

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       {

     

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         lib,

     

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         buildPythonPackage,

     

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         pythonOlder,

     

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         fetchFromGitHub,

     

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         hatchling,

     

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         dask,

     

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         numpy,

     

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         python-dateutil,

     

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         spatial-image,

     

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         xarray,

     

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         xarray-datatree,

     

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         zarr,

     

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         dask-image,

     

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         fsspec,

     

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         jsonschema,

     

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         nbmake,

     

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         pooch,

     

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         pytestCheckHook,

     

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         pytest-mypy,

     

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         urllib3,

     

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       }:

     

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       buildPythonPackage rec {

     

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         pname = "multiscale-spatial-image";

     

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         version = "1.0.1";

     

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         pyproject = true;

     

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         disabled = pythonOlder "3.8";

     

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         src = fetchFromGitHub {

     

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           owner = "spatial-image";

     

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           repo = "multiscale-spatial-image";

     

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           rev = "refs/tags/v${version}";

     

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           hash = "sha256-s/88N8IVkj+9MZYAtEJSpmmDdjIxf4S6U5gYr86Ikrw=";

     

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         };

     

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         build-system = [ hatchling ];

     

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         dependencies = [

     

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           dask

     

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           numpy

     

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           python-dateutil

     

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           spatial-image

     

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           xarray

     

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           xarray-datatree

     

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           zarr

     

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         ];

     

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         optional-dependencies = {

     

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           dask-image = [ dask-image ];

     

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           #itk = [

     

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           #  itk-filtering # not in nixpkgs yet

     

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           #];

     

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           test = [

     

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             dask-image

     

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             fsspec

     

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             #ipfsspec # not in nixpkgs

     

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             #itk-filtering # not in nixpkgs

     

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             jsonschema

     

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             nbmake

     

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             pooch

     

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             pytest-mypy

     

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             urllib3

     

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           ];

     

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         };

     

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         nativeCheckInputs = [ pytestCheckHook ] ++ optional-dependencies.test;

     

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         doCheck = false; # all test files try to download data

     

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         pythonImportsCheck = [ "multiscale_spatial_image" ];

     

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         meta = {

     

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           description = "Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF";

     

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           homepage = "https://github.com/spatial-image/multiscale-spatial-image";

     

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           changelog = "https://github.com/spatial-image/multiscale-spatial-image/releases/tag/v${version}";

     

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           license = lib.licenses.asl20;

     

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           maintainers = with lib.maintainers; [ bcdarwin ];

     

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         };

     

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       }

+59

pkgs/development/python-modules/xarray-datatree/default.nix

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       {

     

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         lib,

     

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         buildPythonPackage,

     

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         fetchFromGitHub,

     

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         pythonOlder,

     

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         check-manifest,

     

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         setuptools,

     

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         setuptools-scm,

     

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         packaging,

     

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         pytestCheckHook,

     

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         xarray,

     

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         zarr,

     

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       }:

     

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       buildPythonPackage rec {

     

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         pname = "datatree";

     

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         version = "0.0.14";

     

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         pyproject = true;

     

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         disabled = pythonOlder "3.9";

     

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         src = fetchFromGitHub {

     

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           owner = "xarray-contrib";

     

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           repo = "datatree";

     

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           rev = "refs/tags/v${version}";

     

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           hash = "sha256-C6+WcHc2+sftJ5Yyh/9TTIHhAEwhAqSsSkaDwtq7J90=";

     

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         };

     

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         build-system = [

     

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           check-manifest

     

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           setuptools

     

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           setuptools-scm

     

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         ];

     

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         dependencies = [

     

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           packaging

     

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           xarray

     

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         ];

     

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         nativeCheckInputs = [

     

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           pytestCheckHook

     

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           zarr

     

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         ];

     

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         pythonImportsCheck = [ "datatree" ];

     

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         disabledTests = [

     

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           # output formatting issue, likely due to underlying library version difference:

     

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           "test_diff_node_data"

     

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         ];

     

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         meta = with lib; {

     

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           description = "Tree-like hierarchical data structure for xarray";

     

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           homepage = "https://xarray-datatree.readthedocs.io";

     

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           changelog = "https://github.com/xarray-contrib/datatree/releases/tag/v${version}";

     

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           license = licenses.asl20;

     

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           maintainers = with maintainers; [ bcdarwin ];

     

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         };

     

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       }

pkgs/top-level/python-packages.nix

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         multiprocess = callPackage ../development/python-modules/multiprocess { };

     

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         multiscale-spatial-image = callPackage ../development/python-modules/multiscale-spatial-image { };

     

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         multiset = callPackage ../development/python-modules/multiset { };

     

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         multitasking = callPackage ../development/python-modules/multitasking { };

     
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         xarray = callPackage ../development/python-modules/xarray { };

     

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         xarray-dataclasses = callPackage ../development/python-modules/xarray-dataclasses { };

     

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         xarray-datatree = callPackage ../development/python-modules/xarray-datatree { };

     

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         xarray-einstats = callPackage ../development/python-modules/xarray-einstats { };

     

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