···
audio = [ pkgs.portaudio ];
BayesSAE = [ pkgs.gsl_1 ];
BayesVarSel = [ pkgs.gsl_1 ];
243
-
BayesXsrc = [ pkgs.readline pkgs.ncurses ];
243
+
BayesXsrc = [ pkgs.readline.dev pkgs.ncurses ];
bigGP = [ pkgs.openmpi ];
BiocCheck = [ pkgs.which ];
Biostrings = [ pkgs.zlib ];
249
-
cairoDevice = [ pkgs.gtk2 ];
250
-
Cairo = [ pkgs.libtiff pkgs.libjpeg pkgs.cairo ];
249
+
cairoDevice = [ pkgs.gtk2.dev ];
250
+
Cairo = [ pkgs.libtiff pkgs.libjpeg pkgs.cairo.dev pkgs.x11 pkgs.fontconfig.lib ];
Cardinal = [ pkgs.which ];
ChemmineOB = [ pkgs.openbabel pkgs.pkgconfig ];
curl = [ pkgs.curl.dev ];
256
-
devEMF = [ pkgs.xorg.libXft ];
256
+
devEMF = [ pkgs.xorg.libXft.dev pkgs.x11 ];
diversitree = [ pkgs.gsl_1 pkgs.fftw ];
EMCluster = [ pkgs.liblapack ];
259
-
fftw = [ pkgs.fftw ];
260
-
fftwtools = [ pkgs.fftw ];
259
+
fftw = [ pkgs.fftw.dev ];
260
+
fftwtools = [ pkgs.fftw.dev ];
geoCount = [ pkgs.gsl_1 ];
263
-
git2r = [ pkgs.zlib pkgs.openssl ];
263
+
git2r = [ pkgs.zlib.dev pkgs.openssl.dev ];
glpkAPI = [ pkgs.gmp pkgs.glpk ];
266
-
gmp = [ pkgs.gmp ];
266
+
gmp = [ pkgs.gmp.dev ];
graphscan = [ pkgs.gsl_1 ];
h5 = [ pkgs.hdf5-cpp pkgs.which ];
···
275
-
jpeg = [ pkgs.libjpeg ];
275
+
jpeg = [ pkgs.libjpeg.dev ];
277
-
kza = [ pkgs.fftw ];
277
+
kza = [ pkgs.fftw.dev ];
libamtrack = [ pkgs.gsl_1 ];
mvabund = [ pkgs.gsl_1 ];
281
-
mwaved = [ pkgs.fftw ];
281
+
mwaved = [ pkgs.fftw.dev ];
openssl = [ pkgs.openssl.dev ];
···
pbdMPI = [ pkgs.openmpi ];
pbdNCDF4 = [ pkgs.netcdf ];
pbdPROF = [ pkgs.openmpi ];
290
-
PKI = [ pkgs.openssl ];
290
+
PKI = [ pkgs.openssl.dev ];
png = [ pkgs.libpng.dev ];
292
-
PopGenome = [ pkgs.zlib ];
292
+
PopGenome = [ pkgs.zlib.dev ];
R2GUESS = [ pkgs.gsl_1 ];
297
-
R2SWF = [ pkgs.zlib pkgs.libpng pkgs.freetype ];
297
+
R2SWF = [ pkgs.zlib pkgs.libpng pkgs.freetype.dev ];
RAppArmor = [ pkgs.libapparmor ];
rapportools = [ pkgs.which ];
rapport = [ pkgs.which ];
301
-
rbamtools = [ pkgs.zlib ];
302
-
rcdd = [ pkgs.gmp ];
303
-
RcppCNPy = [ pkgs.zlib ];
301
+
rbamtools = [ pkgs.zlib.dev ];
302
+
rcdd = [ pkgs.gmp.dev ];
303
+
RcppCNPy = [ pkgs.zlib.dev ];
RcppGSL = [ pkgs.gsl_1 ];
305
-
RcppOctave = [ pkgs.zlib pkgs.bzip2 pkgs.icu pkgs.lzma pkgs.pcre pkgs.octave ];
305
+
RcppOctave = [ pkgs.zlib pkgs.bzip2.dev pkgs.icu pkgs.lzma.dev pkgs.pcre.dev pkgs.octave ];
RcppZiggurat = [ pkgs.gsl_1 ];
rgdal = [ pkgs.proj pkgs.gdal ];
309
-
rggobi = [ pkgs.ggobi pkgs.gtk2 pkgs.libxml2 ];
309
+
rggobi = [ pkgs.ggobi pkgs.gtk2.dev pkgs.libxml2.dev ];
rgl = [ pkgs.mesa pkgs.xlibsWrapper ];
312
-
RGtk2 = [ pkgs.gtk2 ];
312
+
RGtk2 = [ pkgs.gtk2.dev ];
314
-
Rhpc = [ pkgs.zlib pkgs.bzip2 pkgs.icu pkgs.lzma pkgs.openmpi pkgs.pcre ];
315
-
Rhtslib = [ pkgs.zlib ];
316
-
RJaCGH = [ pkgs.zlib ];
314
+
Rhpc = [ pkgs.zlib pkgs.bzip2.dev pkgs.icu pkgs.lzma.dev pkgs.openmpi pkgs.pcre.dev ];
315
+
Rhtslib = [ pkgs.zlib.dev ];
316
+
RJaCGH = [ pkgs.zlib.dev ];
318
-
rJava = [ pkgs.zlib pkgs.bzip2 pkgs.icu pkgs.lzma pkgs.pcre pkgs.jdk pkgs.libzip ];
318
+
rJava = [ pkgs.zlib pkgs.bzip2.dev pkgs.icu pkgs.lzma.dev pkgs.pcre.dev pkgs.jdk pkgs.libzip ];
Rlibeemd = [ pkgs.gsl_1 ];
320
-
rmatio = [ pkgs.zlib ];
321
-
Rmpfr = [ pkgs.gmp pkgs.mpfr ];
320
+
rmatio = [ pkgs.zlib.dev ];
321
+
Rmpfr = [ pkgs.gmp pkgs.mpfr.dev ];
RMySQL = [ pkgs.zlib pkgs.mysql.lib ];
RNetCDF = [ pkgs.netcdf pkgs.udunits ];
RODBCext = [ pkgs.libiodbc ];
RODBC = [ pkgs.libiodbc ];
rpg = [ pkgs.postgresql ];
328
-
rphast = [ pkgs.pcre pkgs.zlib pkgs.bzip2 pkgs.gzip pkgs.readline ];
328
+
rphast = [ pkgs.pcre.dev pkgs.zlib pkgs.bzip2 pkgs.gzip pkgs.readline ];
Rpoppler = [ pkgs.poppler ];
RPostgreSQL = [ pkgs.postgresql ];
RProtoBuf = [ pkgs.protobuf ];
rPython = [ pkgs.python ];
333
-
RSclient = [ pkgs.openssl ];
333
+
RSclient = [ pkgs.openssl.dev ];
Rserve = [ pkgs.openssl ];
335
-
Rssa = [ pkgs.fftw ];
336
-
rtfbs = [ pkgs.zlib pkgs.pcre pkgs.bzip2 pkgs.gzip pkgs.readline ];
337
-
rtiff = [ pkgs.libtiff ];
335
+
Rssa = [ pkgs.fftw.dev ];
336
+
rtfbs = [ pkgs.zlib pkgs.pcre.dev pkgs.bzip2 pkgs.gzip pkgs.readline ];
337
+
rtiff = [ pkgs.libtiff.dev ];
339
-
RVowpalWabbit = [ pkgs.zlib pkgs.boost ];
339
+
RVowpalWabbit = [ pkgs.zlib.dev pkgs.boost ];
SAVE = [ pkgs.zlib pkgs.bzip2 pkgs.icu pkgs.lzma pkgs.pcre ];
sdcTable = [ pkgs.gmp pkgs.glpk ];
seewave = [ pkgs.fftw.dev pkgs.libsndfile.dev ];
344
-
seqinr = [ pkgs.zlib ];
345
-
seqminer = [ pkgs.zlib pkgs.bzip2 ];
346
-
showtext = [ pkgs.zlib pkgs.libpng pkgs.icu pkgs.freetype ];
344
+
seqinr = [ pkgs.zlib.dev ];
345
+
seqminer = [ pkgs.zlib.dev pkgs.bzip2 ];
346
+
showtext = [ pkgs.zlib pkgs.libpng pkgs.icu pkgs.freetype.dev ];
simplexreg = [ pkgs.gsl_1 ];
SOD = [ pkgs.cudatoolkit ]; # requres CL/cl.h
349
-
spate = [ pkgs.fftw ];
349
+
spate = [ pkgs.fftw.dev ];
sprint = [ pkgs.openmpi ];
stringi = [ pkgs.icu.dev ];
survSNP = [ pkgs.gsl_1 ];
355
-
sysfonts = [ pkgs.zlib pkgs.libpng pkgs.freetype ];
356
-
TAQMNGR = [ pkgs.zlib ];
357
-
tiff = [ pkgs.libtiff ];
355
+
sysfonts = [ pkgs.zlib pkgs.libpng pkgs.freetype.dev ];
356
+
TAQMNGR = [ pkgs.zlib.dev ];
357
+
tiff = [ pkgs.libtiff.dev ];
359
-
tkrplot = [ pkgs.xorg.libX11 ];
359
+
tkrplot = [ pkgs.xorg.libX11 pkgs.tk.dev ];
topicmodels = [ pkgs.gsl_1 ];
udunits2 = [ pkgs.udunits pkgs.expat ];
VBmix = [ pkgs.gsl_1 pkgs.fftw pkgs.qt4 ];
365
-
WhopGenome = [ pkgs.zlib ];
366
-
XBRL = [ pkgs.zlib pkgs.libxml2 ];
367
-
xml2 = [ pkgs.libxml2 ];
365
+
WhopGenome = [ pkgs.zlib.dev ];
366
+
XBRL = [ pkgs.zlib pkgs.libxml2.dev ];
367
+
xml2 = [ pkgs.libxml2.dev ];
XML = [ pkgs.libtool pkgs.libxml2.dev pkgs.xmlsec pkgs.libxslt ];
369
-
affyPLM = [ pkgs.zlib ];
370
-
bamsignals = [ pkgs.zlib ];
371
-
BitSeq = [ pkgs.zlib ];
369
+
affyPLM = [ pkgs.zlib.dev ];
370
+
bamsignals = [ pkgs.zlib.dev ];
371
+
BitSeq = [ pkgs.zlib.dev ];
DiffBind = [ pkgs.zlib ];
ShortRead = [ pkgs.zlib.dev ];
374
-
oligo = [ pkgs.zlib ];
375
-
gmapR = [ pkgs.zlib ];
376
-
Rsubread = [ pkgs.zlib ];
374
+
oligo = [ pkgs.zlib.dev ];
375
+
gmapR = [ pkgs.zlib.dev ];
376
+
Rsubread = [ pkgs.zlib.dev ];
XVector = [ pkgs.zlib.dev ];
Rsamtools = [ pkgs.zlib.dev ];
379
-
rtracklayer = [ pkgs.zlib ];
380
-
affyio = [ pkgs.zlib ];
381
-
VariantAnnotation = [ pkgs.zlib ];
382
-
snpStats = [ pkgs.zlib ];
379
+
rtracklayer = [ pkgs.zlib.dev ];
380
+
affyio = [ pkgs.zlib.dev ];
381
+
VariantAnnotation = [ pkgs.zlib.dev ];
382
+
snpStats = [ pkgs.zlib.dev ];
packagesWithBuildInputs = {
···
1794
+
Cairo = old.Cairo.overrideDerivation (attrs: {
1795
+
NIX_LDFLAGS = "-lfontconfig";
curl = old.curl.overrideDerivation (attrs: {
preConfigure = "patchShebangs configure";
···
devEMF = old.devEMF.overrideDerivation (attrs: {
NIX_CFLAGS_LINK = "-L${pkgs.xorg.libXft.out}/lib -lXft";
1866
+
NIX_LDFLAGS = "-lX11";
slfm = old.slfm.overrideDerivation (attrs: {
pyrox.dev