commit cd2271529051f8f02bd0bbb631ef15cead9ca78c · pyrox.dev/nixpkgs

+31 -30

pkgs/development/python-modules/freud/default.nix

···

       1
        
       {

     

       2
        
         lib,

     

       3
       -
         stdenv,

     

       4
        
         buildPythonPackage,

     

       5
        
         fetchFromGitHub,

     

       6
       -
         fetchpatch,

     

       7
       -
         cmake,

     

       0
        
       
     

       8
        
         cython,

     

       9
        
         oldest-supported-numpy,

     

       10
       -
         scikit-build,

     

       11
       -
         setuptools,

     

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         tbb,

     

       0
        
       
     

       0
        
       
     

       0
        
       
     

       0
        
       
     

       0
        
       
     

       0
        
       
     

       0
        
       
     

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         numpy,

     

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         rowan,

     

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         scipy,

     

       0
        
       
     

       0
        
       
     

       0
        
       
     

       16
        
         pytestCheckHook,

     

       17
        
         python,

     

       18
        
         gsd,

     
···

       22
        
       

     

       23
        
       buildPythonPackage rec {

     

       24
        
         pname = "freud";

     

       25
       -
         version = "3.3.1";

     

       26
        
         pyproject = true;

     

       27
        
       

     

       28
        
         src = fetchFromGitHub {

     

       29
        
           owner = "glotzerlab";

     

       30
        
           repo = "freud";

     

       31
        
           tag = "v${version}";

     

       32
       -
           hash = "sha256-3THoGPjfaDy2s96+Oaf1f2SDzxTaqRDQlNa3gZ/ytUU=";

     

       33
        
           fetchSubmodules = true;

     

       34
        
         };

     

       35
        
       

     

       36
       -
         patches = [

     

       37
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           # https://github.com/glotzerlab/freud/issues/1269

     

       38
       -
           (fetchpatch {

     

       39
       -
             url = "https://github.com/glotzerlab/freud/commit/8f636e3815737945e45da5b9996b5f69df07c9a5.patch";

     

       40
       -
             hash = "sha256-PLorRrYj16oBWHYzXDq62kECzVTtyr+1Z20DJqTkXxg=";

     

       41
       -
           })

     

       42
       -
         ];

     

       43
       -
       

     

       44
        
         # Because we prefer to not `leaveDotGit`, we need to fool upstream into

     

       45
        
         # thinking we left the .git files in the submodules, so cmake won't think we

     

       46
        
         # didn't initialize them. Upstream doesn't support using the system wide

     
···

       51
        
           touch extern/{voro++,fsph,Eigen}/.git

     

       52
        
         '';

     

       53
        
       

     

       0
        
       
     

       0
        
       
     

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       0
        
       
     

       0
        
       
     

       0
        
       
     

       54
        
         nativeBuildInputs = [

     

       55
        
           cmake

     

       56
       -
           cython

     

       57
       -
           oldest-supported-numpy

     

       58
       -
           scikit-build

     

       59
       -
           setuptools

     

       60
        
         ];

     

       61
        
         dontUseCmakeConfigure = true;

     

       62
       -
         buildInputs = [ tbb ];

     

       0
        
       
     

       0
        
       
     

       0
        
       
     

       63
        
       

     

       64
       -
         propagatedBuildInputs = [

     

       65
        
           numpy

     

       66
        
           rowan

     

       67
        
           scipy

     

       0
        
       
     

       68
        
         ];

     

       69
        
       

     

       70
        
         nativeCheckInputs = [

     
···

       72
        
           gsd

     

       73
        
           matplotlib

     

       74
        
           sympy

     

       75
       -
         ];

     

       76
       -
         disabledTests = [

     

       77
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           # https://github.com/glotzerlab/freud/issues/961

     

       78
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           #

     

       79
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           # For x86_64-linux, see:

     

       80
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           #

     

       81
       -
           # https://github.com/glotzerlab/freud/issues/961#issuecomment-2553344968

     

       82
       -
           "test_docstring"

     

       83
        
         ];

     

       84
        
         # On top of cd $out due to https://github.com/NixOS/nixpkgs/issues/255262 ,

     

       85
        
         # we need to also copy the tests because otherwise pytest won't find them.

···

       1
        
       {

     

       2
        
         lib,

     

       0
        
       
     

       3
        
         buildPythonPackage,

     

       4
        
         fetchFromGitHub,

     

       5
       +
       

     

       6
       +
         # build-system

     

       7
       +
         scikit-build-core,

     

       8
        
         cython,

     

       9
        
         oldest-supported-numpy,

     

       10
       +
       

     

       11
       +
         # nativeBuildInputs

     

       12
       +
         cmake,

     

       13
       +
         ninja,

     

       14
       +
       

     

       15
       +
         # buildInputs

     

       16
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         tbb_2022,

     

       17
       +
         nanobind,

     

       18
       +
       

     

       19
       +
         # dependencies

     

       20
        
         numpy,

     

       21
        
         rowan,

     

       22
        
         scipy,

     

       23
       +
         parsnip,

     

       24
       +
       

     

       25
       +
         # tests

     

       26
        
         pytestCheckHook,

     

       27
        
         python,

     

       28
        
         gsd,

     
···

       32
        
       

     

       33
        
       buildPythonPackage rec {

     

       34
        
         pname = "freud";

     

       35
       +
         version = "3.4.0";

     

       36
        
         pyproject = true;

     

       37
        
       

     

       38
        
         src = fetchFromGitHub {

     

       39
        
           owner = "glotzerlab";

     

       40
        
           repo = "freud";

     

       41
        
           tag = "v${version}";

     

       42
       +
           hash = "sha256-JX3pbzNTj85UTAtWYnDRvtJSjS27qgY/vitaAjmXbjA=";

     

       43
        
           fetchSubmodules = true;

     

       44
        
         };

     

       45
        
       

     

       0
        
       
     

       0
        
       
     

       0
        
       
     

       0
        
       
     

       0
        
       
     

       0
        
       
     

       0
        
       
     

       0
        
       
     

       46
        
         # Because we prefer to not `leaveDotGit`, we need to fool upstream into

     

       47
        
         # thinking we left the .git files in the submodules, so cmake won't think we

     

       48
        
         # didn't initialize them. Upstream doesn't support using the system wide

     
···

       53
        
           touch extern/{voro++,fsph,Eigen}/.git

     

       54
        
         '';

     

       55
        
       

     

       56
       +
         build-system = [

     

       57
       +
           scikit-build-core

     

       58
       +
           cython

     

       59
       +
           oldest-supported-numpy

     

       60
       +
         ];

     

       61
       +
       

     

       62
        
         nativeBuildInputs = [

     

       63
        
           cmake

     

       64
       +
           ninja

     

       0
        
       
     

       0
        
       
     

       0
        
       
     

       65
        
         ];

     

       66
        
         dontUseCmakeConfigure = true;

     

       67
       +
         buildInputs = [

     

       68
       +
           tbb_2022

     

       69
       +
           nanobind

     

       70
       +
         ];

     

       71
        
       

     

       72
       +
         dependencies = [

     

       73
        
           numpy

     

       74
        
           rowan

     

       75
        
           scipy

     

       76
       +
           parsnip

     

       77
        
         ];

     

       78
        
       

     

       79
        
         nativeCheckInputs = [

     
···

       81
        
           gsd

     

       82
        
           matplotlib

     

       83
        
           sympy

     

       0
        
       
     

       0
        
       
     

       0
        
       
     

       0
        
       
     

       0
        
       
     

       0
        
       
     

       0
        
       
     

       0
        
       
     

       84
        
         ];

     

       85
        
         # On top of cd $out due to https://github.com/NixOS/nixpkgs/issues/255262 ,

     

       86
        
         # we need to also copy the tests because otherwise pytest won't find them.

+44

pkgs/development/python-modules/parsnip/default.nix

···

       1
       +
       {

     

       2
       +
         lib,

     

       3
       +
         buildPythonPackage,

     

       4
       +
         fetchFromGitHub,

     

       5
       +
         setuptools,

     

       6
       +
         wheel,

     

       7
       +
         more-itertools,

     

       8
       +
         numpy,

     

       9
       +
       }:

     

       10
       +
       

     

       11
       +
       buildPythonPackage rec {

     

       12
       +
         pname = "parsnip";

     

       13
       +
         version = "0.4.0";

     

       14
       +
         pyproject = true;

     

       15
       +
       

     

       16
       +
         src = fetchFromGitHub {

     

       17
       +
           owner = "glotzerlab";

     

       18
       +
           repo = "parsnip";

     

       19
       +
           rev = "v${version}";

     

       20
       +
           hash = "sha256-Nac0afep7+HkpSBpqClHpPFSc8H3g8l4q067RQe5K54=";

     

       21
       +
         };

     

       22
       +
       

     

       23
       +
         build-system = [

     

       24
       +
           setuptools

     

       25
       +
           wheel

     

       26
       +
         ];

     

       27
       +
       

     

       28
       +
         dependencies = [

     

       29
       +
           more-itertools

     

       30
       +
           numpy

     

       31
       +
         ];

     

       32
       +
       

     

       33
       +
         pythonImportsCheck = [

     

       34
       +
           "parsnip"

     

       35
       +
         ];

     

       36
       +
       

     

       37
       +
         meta = {

     

       38
       +
           description = "Lightweight, performant library for parsing CIF files in Python";

     

       39
       +
           homepage = "https://github.com/glotzerlab/parsnip";

     

       40
       +
           changelog = "https://github.com/glotzerlab/parsnip/blob/${src.rev}/changelog.rst";

     

       41
       +
           license = lib.licenses.bsd3;

     

       42
       +
           maintainers = with lib.maintainers; [ doronbehar ];

     

       43
       +
         };

     

       44
       +
       }

+2 -2

pkgs/development/python-modules/rowan/default.nix

···

       10
        
       

     

       11
        
       buildPythonPackage rec {

     

       12
        
         pname = "rowan";

     

       13
       -
         version = "1.3.0";

     

       14
        
         pyproject = true;

     

       15
        
       

     

       16
        
         src = fetchFromGitHub {

     

       17
        
           owner = "glotzerlab";

     

       18
        
           repo = "rowan";

     

       19
        
           rev = "v${version}";

     

       20
       -
           hash = "sha256-klIqyX04w1xYmYtAbLF5jwpcJ83oKOaENboxyCL70EY=";

     

       21
        
         };

     

       22
        
       

     

       23
        
         nativeBuildInputs = [

···

       10
        
       

     

       11
        
       buildPythonPackage rec {

     

       12
        
         pname = "rowan";

     

       13
       +
         version = "1.3.2";

     

       14
        
         pyproject = true;

     

       15
        
       

     

       16
        
         src = fetchFromGitHub {

     

       17
        
           owner = "glotzerlab";

     

       18
        
           repo = "rowan";

     

       19
        
           rev = "v${version}";

     

       20
       +
           hash = "sha256-fcxVpzLhbLjPIifNBx0olq1dUTmNM9IH38MQybkWZSg=";

     

       21
        
         };

     

       22
        
       

     

       23
        
         nativeBuildInputs = [

pkgs/top-level/python-packages.nix

···

       11437
        
       

     

       11438
        
         parsley = callPackage ../development/python-modules/parsley { };

     

       11439
        
       

     

       0
        
       
     

       0
        
       
     

       11440
        
         parso = callPackage ../development/python-modules/parso { };

     

       11441
        
       

     

       11442
        
         parsy = callPackage ../development/python-modules/parsy { };

···

       11437
        
       

     

       11438
        
         parsley = callPackage ../development/python-modules/parsley { };

     

       11439
        
       

     

       11440
       +
         parsnip = callPackage ../development/python-modules/parsnip { };

     

       11441
       +
       

     

       11442
        
         parso = callPackage ../development/python-modules/parso { };

     

       11443
        
       

     

       11444
        
         parsy = callPackage ../development/python-modules/parsy { };