···

       
13
       
 
       
  setuptools,

     

       
14
       
 
       
  samtools,

     

       
15
       
 
       
  zlib,

     

       
0
       
 
       

     

       
16
       
 
       
}:

     

       
17
       
 
       


     

       
18
       
-
       
buildPythonPackage {

     

       
19
       
 
       
  pname = "pysam";

     

       
20
       
-
       
  version = "0.22.1-unstable-2024-10-30";

     

       
21
       
 
       
  pyproject = true;

     

       
22
       
 
       


     

       
23
       
 
       
  # Fetching from GitHub instead of PyPi cause the 0.13 src release on PyPi is

     
···

       
26
       
 
       
  src = fetchFromGitHub {

     

       
27
       
 
       
    owner = "pysam-developers";

     

       
28
       
 
       
    repo = "pysam";

     

       
29
       
-
       
    rev = "0eae5be21ac3ab3ac7aa770a3931e2977e37b909";

     

       
30
       
-
       
    hash = "sha256-i8glYSpuCRNhNtK4i6eUrerz8daiMfY/YgDwgSuELbc=";

     

       
31
       
 
       
  };

     

       
32
       
 
       


     

       
33
       
-
       
  nativeBuildInputs = [

     

       
34
       
 
       
    cython

     

       
35
       
-
       
    samtools

     

       
36
       
 
       
    setuptools

     

       
0
       
 
       

     

       
0
       
 
       

     

       
0
       
 
       

     

       
0
       
 
       

     

       
37
       
 
       
  ];

     

       
38
       
 
       


     

       
39
       
 
       
  buildInputs = [

     
···

       
73
       
 
       
    "pysam.libchtslib"

     

       
74
       
 
       
    "pysam.libcutils"

     

       
75
       
 
       
    "pysam.libcvcf"

     

       
0
       
 
       

     

       
76
       
 
       
  ];

     

       
77
       
 
       


     

       
0
       
 
       

     

       
0
       
 
       

     

       
78
       
 
       
  meta = {

     

       
79
       
 
       
    description = "Python module for reading, manipulating and writing genome data sets";

     

       
80
       
 
       
    downloadPage = "https://github.com/pysam-developers/pysam";

     

       
0
       
 
       

     

       
81
       
 
       
    homepage = "https://pysam.readthedocs.io";

     

       
82
       
 
       
    maintainers = with lib.maintainers; [ unode ];

     

       
83
       
 
       
    license = lib.licenses.mit;

     

···

       
13
       
 
       
  setuptools,

     

       
14
       
 
       
  samtools,

     

       
15
       
 
       
  zlib,

     

       
16
       
+
       
  nix-update-script,

     

       
17
       
 
       
}:

     

       
18
       
 
       


     

       
19
       
+
       
buildPythonPackage rec {

     

       
20
       
 
       
  pname = "pysam";

     

       
21
       
+
       
  version = "0.23.3";

     

       
22
       
 
       
  pyproject = true;

     

       
23
       
 
       


     

       
24
       
 
       
  # Fetching from GitHub instead of PyPi cause the 0.13 src release on PyPi is

     
···

       
27
       
 
       
  src = fetchFromGitHub {

     

       
28
       
 
       
    owner = "pysam-developers";

     

       
29
       
 
       
    repo = "pysam";

     

       
30
       
+
       
    tag = "v${version}";

     

       
31
       
+
       
    hash = "sha256-yOLnfuGQW+j0nHy4MRlwurZMpeRHTGmQ9eLmihcAGoQ=";

     

       
32
       
 
       
  };

     

       
33
       
 
       


     

       
34
       
+
       
  build-system = [

     

       
35
       
 
       
    cython

     

       
0
       
 
       

     

       
36
       
 
       
    setuptools

     

       
37
       
+
       
  ];

     

       
38
       
+
       


     

       
39
       
+
       
  nativeBuildInputs = [

     

       
40
       
+
       
    samtools

     

       
41
       
 
       
  ];

     

       
42
       
 
       


     

       
43
       
 
       
  buildInputs = [

     
···

       
77
       
 
       
    "pysam.libchtslib"

     

       
78
       
 
       
    "pysam.libcutils"

     

       
79
       
 
       
    "pysam.libcvcf"

     

       
80
       
+
       
    "pysam.libcsamtools"

     

       
81
       
 
       
  ];

     

       
82
       
 
       


     

       
83
       
+
       
  passthru.updateScript = nix-update-script { };

     

       
84
       
+
       


     

       
85
       
 
       
  meta = {

     

       
86
       
 
       
    description = "Python module for reading, manipulating and writing genome data sets";

     

       
87
       
 
       
    downloadPage = "https://github.com/pysam-developers/pysam";

     

       
88
       
+
       
    changelog = "https://github.com/pysam-developers/pysam/releases/tag/${src.tag}";

     

       
89
       
 
       
    homepage = "https://pysam.readthedocs.io";

     

       
90
       
 
       
    maintainers = with lib.maintainers; [ unode ];

     

       
91
       
 
       
    license = lib.licenses.mit;