commit 7cf2cecb84172ca7c73e00beaaf242d307758c0c · pyrox.dev/nixpkgs

+14 -6
pkgs/development/python-modules/pysam/default.nix
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         setuptools,

     

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         samtools,

     

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         zlib,

     

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         nix-update-script,

     

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       }:

     

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       -
       buildPythonPackage {

     

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       buildPythonPackage rec {

     

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         pname = "pysam";

     

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         version = "0.22.1-unstable-2024-10-30";

     

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         version = "0.23.3";

     

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         pyproject = true;

     

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         # Fetching from GitHub instead of PyPi cause the 0.13 src release on PyPi is

     
···

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         src = fetchFromGitHub {

     

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           owner = "pysam-developers";

     

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           repo = "pysam";

     

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           rev = "0eae5be21ac3ab3ac7aa770a3931e2977e37b909";

     

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           hash = "sha256-i8glYSpuCRNhNtK4i6eUrerz8daiMfY/YgDwgSuELbc=";

     

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           tag = "v${version}";

     

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           hash = "sha256-yOLnfuGQW+j0nHy4MRlwurZMpeRHTGmQ9eLmihcAGoQ=";

     

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         };

     

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         nativeBuildInputs = [

     

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         build-system = [

     

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           cython

     

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           samtools

     

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           setuptools

     

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         ];

     

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         nativeBuildInputs = [

     

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           samtools

     

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         ];

     

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         buildInputs = [

     
···

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           "pysam.libchtslib"

     

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           "pysam.libcutils"

     

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           "pysam.libcvcf"

     

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           "pysam.libcsamtools"

     

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         ];

     

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         passthru.updateScript = nix-update-script { };

     

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         meta = {

     

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           description = "Python module for reading, manipulating and writing genome data sets";

     

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           downloadPage = "https://github.com/pysam-developers/pysam";

     

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           changelog = "https://github.com/pysam-developers/pysam/releases/tag/${src.tag}";

     

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           homepage = "https://pysam.readthedocs.io";

     

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           maintainers = with lib.maintainers; [ unode ];

     

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           license = lib.licenses.mit;