···

       
1
       
-
       
{ stdenv, fetchurl, python27Packages, glew, freeglut, libpng, libxml2, tk, freetype }:

     

       
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2
       
 
       


     

       
3
       
 
       
let

     

       
4
       
-
       
  version = "1.8.4.0";

     

       
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5
       
 
       
in

     

       
6
       
-
       
python27Packages.buildPythonApplication {

     

       
7
       
 
       
  name = "pymol-${version}";

     

       
8
       
 
       
  src = fetchurl {

     

       
9
       
-
       
    url = "mirror://sourceforge/project/pymol/pymol/1.8/pymol-v1.8.4.0.tar.bz2";

     

       
10
       
 
       
    sha256 = "0yfj8g5yic9zz6f0bw2n8h6ifvgsn8qvhq84alixsi28wzppn55n";

     

       
11
       
 
       
  };

     

       
12
       
 
       


     

       
13
       
-
       
  buildInputs = [ python27Packages.numpy glew freeglut libpng libxml2 tk freetype ];

     

       
14
       
 
       
  NIX_CFLAGS_COMPILE = "-I ${libxml2.dev}/include/libxml2";

     

       
15
       
 
       


     

       
16
       
 
       
  installPhase = ''

     

       
17
       
 
       
    python setup.py install --home=$out

     

       
0
       
 
       

     

       
0
       
 
       

     

       
18
       
 
       
  '';

     

       
19
       
 
       


     

       
20
       
-
       
  meta = with stdenv.lib; {

     

       
21
       
-
       
    description = "A Python-enhanced molecular graphics tool";

     

       
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22
       
 
       
    homepage = "https://www.pymol.org/";

     

       
23
       
 
       
    license = licenses.psfl;

     

       
24
       
 
       
  };

     

···

       
1
       
+
       
{ stdenv, fetchurl, makeDesktopItem

     

       
2
       
+
       
, python3, python3Packages

     

       
3
       
+
       
, glew, freeglut, libpng, libxml2, tk, freetype }:

     

       
4
       
+
       


     

       
5
       
+
       


     

       
6
       
+
       
with stdenv.lib;

     

       
7
       
 
       


     

       
8
       
 
       
let

     

       
9
       
+
       
  pname = "pymol";

     

       
10
       
+
       
  ver_maj = "1.8";

     

       
11
       
+
       
  ver_min = "4";

     

       
12
       
+
       
  version = "${ver_maj}.${ver_min}.0";

     

       
13
       
+
       
  description = "A Python-enhanced molecular graphics tool";

     

       
14
       
+
       


     

       
15
       
+
       
  desktopItem = makeDesktopItem {

     

       
16
       
+
       
    name = "${pname}";

     

       
17
       
+
       
    exec = "${pname}";

     

       
18
       
+
       
    desktopName = "PyMol Molecular Graphics System";

     

       
19
       
+
       
    genericName = "Molecular Modeller";

     

       
20
       
+
       
    comment = description;

     

       
21
       
+
       
    mimeType = "chemical/x-pdb;chemical/x-mdl-molfile;chemical/x-mol2;chemical/seq-aa-fasta;chemical/seq-na-fasta;chemical/x-xyz;chemical/x-mdl-sdf;";

     

       
22
       
+
       
    categories = "Graphics;Education;Science;Chemistry;";

     

       
23
       
+
       
  };

     

       
24
       
 
       
in

     

       
25
       
+
       
python3Packages.buildPythonApplication {

     

       
26
       
 
       
  name = "pymol-${version}";

     

       
27
       
 
       
  src = fetchurl {

     

       
28
       
+
       
    url = "mirror://sourceforge/project/pymol/pymol/${ver_maj}/pymol-v${version}.tar.bz2";

     

       
29
       
 
       
    sha256 = "0yfj8g5yic9zz6f0bw2n8h6ifvgsn8qvhq84alixsi28wzppn55n";

     

       
30
       
 
       
  };

     

       
31
       
 
       


     

       
32
       
+
       
  buildInputs = [ python3Packages.numpy glew freeglut libpng libxml2 tk freetype ];

     

       
33
       
 
       
  NIX_CFLAGS_COMPILE = "-I ${libxml2.dev}/include/libxml2";

     

       
34
       
 
       


     

       
35
       
 
       
  installPhase = ''

     

       
36
       
 
       
    python setup.py install --home=$out

     

       
37
       
+
       
    cp -r ${desktopItem}/share/ $out/

     

       
38
       
+
       
    runHook postInstall

     

       
39
       
 
       
  '';

     

       
40
       
 
       


     

       
41
       
+
       
  postInstall = with python3Packages; ''

     

       
42
       
+
       
    wrapProgram $out/bin/pymol \

     

       
43
       
+
       
      --prefix PYTHONPATH : ${makeSearchPathOutput "lib" python3.sitePackages [ Pmw tkinter ]}

     

       
44
       
+
       
  '';

     

       
45
       
+
       


     

       
46
       
+
       
  meta = {

     

       
47
       
+
       
    description = description;

     

       
48
       
 
       
    homepage = "https://www.pymol.org/";

     

       
49
       
 
       
    license = licenses.psfl;

     

       
50
       
 
       
  };

     

···

       
0
       
 
       

     

       
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0
       
 
       

     

···

       
1
       
+
       
{ lib , buildPythonPackage , fetchPypi, tkinter }:

     

       
2
       
+
       


     

       
3
       
+
       
buildPythonPackage rec {

     

       
4
       
+
       
  pname = "Pmw";

     

       
5
       
+
       
  version = "2.0.1";

     

       
6
       
+
       
  name = "${pname}-${version}";

     

       
7
       
+
       


     

       
8
       
+
       
  src = fetchPypi {

     

       
9
       
+
       
    inherit pname version;

     

       
10
       
+
       
    sha256 = "080iml3868nxniyn56kcwnbghm10j7fw74a5nj0s19sm4zsji78b";

     

       
11
       
+
       
  };

     

       
12
       
+
       


     

       
13
       
+
       
  propagatedBuildInputs = [ tkinter ];

     

       
14
       
+
       


     

       
15
       
+
       
  # Disable tests due to their xserver requirement

     

       
16
       
+
       
  doCheck = false;

     

       
17
       
+
       


     

       
18
       
+
       
  meta = {

     

       
19
       
+
       
    description = "A toolkit for building high-level compound widgets in Python using the Tkinter module";

     

       
20
       
+
       
    homepage = "http://pmw.sourceforge.net/";

     

       
21
       
+
       
    license = lib.licenses.mit;

     

       
22
       
+
       
    maintainers = with lib.maintainers; [ mounium ];

     

       
23
       
+
       
  };

     

       
24
       
+
       
}

     

···

       
240
       
 
       


     

       
241
       
 
       
  plantuml = callPackage ../tools/misc/plantuml { };

     

       
242
       
 
       


     

       
0
       
 
       

     

       
0
       
 
       

     

       
243
       
 
       
  pyaes = callPackage ../development/python-modules/pyaes.nix { };

     

       
244
       
 
       


     

       
245
       
 
       
  pyatspi = if isPy3k then callPackage ../development/python-modules/pyatspi { } else throw "pyatspi not supported for interpreter ${python.executable}";

     

···

       
240
       
 
       


     

       
241
       
 
       
  plantuml = callPackage ../tools/misc/plantuml { };

     

       
242
       
 
       


     

       
243
       
+
       
  Pmw = callPackage ../development/python-modules/Pmw { };

     

       
244
       
+
       


     

       
245
       
 
       
  pyaes = callPackage ../development/python-modules/pyaes.nix { };

     

       
246
       
 
       


     

       
247
       
 
       
  pyatspi = if isPy3k then callPackage ../development/python-modules/pyatspi { } else throw "pyatspi not supported for interpreter ${python.executable}";